Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_4179PFAM: regulatory protein TetR; KEGG: rha:RHA1_ro06113 transcriptional regulator. (396 aa)    
Predicted Functional Partners:
Tpau_4180
PFAM: Protein of unknown function DUF2236; KEGG: msm:MSMEG_3590 hypothetical protein.
 
     0.713
Tpau_0853
PFAM: regulatory protein TetR; KEGG: sco:SCO0241 transcriptional regulator.
   
    0.559
Tpau_3248
Two component transcriptional regulator, winged helix family; KEGG: sma:SAV_2395 two-component system response regulator for high-affinity potassium transport system; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.
   
    0.524
Tpau_2832
PFAM: regulatory protein TetR; KEGG: rha:RHA1_ro01927 TetR family transcriptional regulator.
  
    0.471
Tpau_2973
PFAM: regulatory protein TetR; KEGG: rha:RHA1_ro06435 TetR family transcriptional regulator.
  
    0.461
Tpau_0140
PFAM: regulatory protein TetR; KEGG: mmi:MMAR_1611 transcriptional regulatory protein.
  
    0.458
Tpau_1918
KEGG: svi:Svir_09690 hypothetical protein.
  
     0.447
Tpau_0085
PFAM: regulatory protein TetR; KEGG: sen:SACE_3479 TetR family transcriptional regulator.
  
     0.439
Tpau_3133
PFAM: regulatory protein TetR; KEGG: mab:MAB_1576 TetR family transcriptional regulator.
  
     0.424
Tpau_3788
PFAM: regulatory protein TetR; KEGG: mjl:Mjls_5098 TetR family transcriptional regulator.
  
   
 0.423
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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