Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_4180PFAM: Protein of unknown function DUF2236; KEGG: msm:MSMEG_3590 hypothetical protein. (315 aa)    
Predicted Functional Partners:
Tpau_4179
PFAM: regulatory protein TetR; KEGG: rha:RHA1_ro06113 transcriptional regulator.
 
     0.713
Tpau_3782
PFAM: thioesterase superfamily protein; KEGG: nfa:nfa51370 hypothetical protein.
  
     0.596
Tpau_3134
PFAM: Protein of unknown function DUF2236; KEGG: mjl:Mjls_0728 hypothetical protein.
  
     0.547
Tpau_0607
KEGG: rop:ROP_63290 putative TetR family transcriptional regulator.
 
     0.538
Tpau_3859
PFAM: thioesterase superfamily protein; KEGG: rer:RER_16990 hypothetical protein.
  
     0.482
Tpau_2392
KEGG: mmi:MMAR_5327 hypothetical protein.
  
     0.479
Tpau_2313
PFAM: Penicillinase repressor; KEGG: mav:MAV_2869 transcriptional repressor, CopY family protein.
  
     0.462
Tpau_3814
PPOX class putative F420-dependent enzyme; KEGG: msm:MSMEG_0048 pyridoxamine 5'-phosphate oxidase family protein; TIGRFAM: PPOX class probable F420-dependent enzyme; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding.
  
     0.456
Tpau_1284
KEGG: rha:RHA1_ro03056 hypothetical protein.
  
     0.444
Tpau_2859
KEGG: mmi:MMAR_1581 hypothetical protein.
  
     0.429
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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