STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_4198PFAM: Luciferase-like, subgroup; KEGG: saq:Sare_0082 luciferase family protein. (302 aa)    
Predicted Functional Partners:
Tpau_1126
KEGG: sma:SAV_7465 hypothetical protein.
  
   
 0.768
Tpau_1332
KEGG: saq:Sare_1321 hypothetical protein.
  
     0.734
Tpau_2352
KEGG: mab:MAB_4008c hypothetical protein.
  
     0.729
Tpau_1183
LPPG domain protein containing protein; KEGG: rop:ROP_63740 LPPG--FO 2-phopspho-L-lactate transferase; TIGRFAM: LPPG domain protein containing protein; PFAM: protein of unknown function UPF0052 and CofD.
 
   
 0.719
Tpau_2456
KEGG: fal:FRAAL1295 hypothetical protein.
  
   
 0.713
Tpau_2156
KEGG: rha:RHA1_ro04145 hypothetical protein.
  
   
 0.696
Tpau_1182
KEGG: mav:MAV_4225 F420-0--gamma-glutamyl ligase; TIGRFAM: F420 biosynthesis protein FbiB, C-terminal domain; F420-dependent oxidoreductase; PFAM: protein of unknown function DUF129; nitroreductase.
 
  
 0.641
Tpau_2843
TIGRFAM: 2-phospho-L-lactate guanylyltransferase CofC; KEGG: nfa:nfa42070 hypothetical protein.
 
   
 0.619
Tpau_0956
KEGG: nfa:nfa48300 hypothetical protein.
  
   
 0.585
Tpau_0900
KEGG: mab:MAB_2114c luciferase-like.
  
     0.561
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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