Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
Tpau_4228TIGRFAM: DNA-3-methyladenine glycosylase I; KEGG: sen:SACE_6025 DNA-3-methyladenine glycosylase I protein; PFAM: methyladenine glycosylase. (201 aa)    
Predicted Functional Partners:
Tpau_3863
Band 7 protein; KEGG: cef:CE2656 hypothetical protein; PFAM: band 7 protein; SMART: band 7 protein.
  
    0.621
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.545
Tpau_4227
Hypothetical protein; KEGG: rsh:Rsph17029_0723 ATP-dependent helicase HrpB.
       0.531
Tpau_0595
HhH-GPD family protein; KEGG: nfa:nfa4290 putative A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; helix-hairpin-helix motif; iron-sulfur cluster loop; SMART: HhH-GPD family protein; iron-sulfur cluster loop.
     
 0.464
Tpau_3550
methylated-DNA/protein- cysteinemethyltransferase; KEGG: kra:Krad_2866 methylated-DNA--protein- cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding.
 
   
 0.429
Tpau_3551
PFAM: 2OG-Fe(II) oxygenase; KEGG: jde:Jden_0402 2OG-Fe(II) oxygenase.
 
     0.417
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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