STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0010KEGG: ava:Ava_0364 hypothetical protein. (155 aa)    
Predicted Functional Partners:
Coch_1009
PFAM: Glycoside hydrolase family 42 domain protein; KEGG: cma:Cmaq_0080 glycoside hydrolase family 42 protein.
  
     0.681
Coch_1431
PFAM: phosphate-selective porin O and P; KEGG: bfs:BF0323 hypothetical protein.
  
     0.613
Coch_0793
KEGG: ckl:CKL_0120 hypothetical protein.
  
     0.565
Coch_0296
KEGG: bfr:BF2483 hypothetical protein.
  
     0.533
Coch_1433
KEGG: sse:Ssed_0364 hypothetical protein.
  
     0.516
Coch_0009
PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: fps:FP1679 hypothetical protein.
       0.475
Coch_0011
KEGG: pfo:Pfl01_3193 hypothetical protein.
       0.470
Coch_0642
KEGG: lic:LIC10181 hypothetical protein.
  
     0.463
Coch_1021
PFAM: RagB/SusD domain protein; KEGG: bvu:BVU_1153 hypothetical protein.
  
     0.460
Coch_1368
KEGG: ctc:CTC01162 membrane associated protein.
  
     0.446
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.