Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0064PFAM: GSCFA domain protein; KEGG: fjo:Fjoh_1897 hypothetical protein. (314 aa)    
Predicted Functional Partners:
Coch_0066
KEGG: fjo:Fjoh_1548 AsmA family protein.
 
     0.786
Coch_0065
methylated-DNA/protein- cysteinemethyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.
       0.752
Coch_0069
PFAM: glycosyl transferase family 9; KEGG: gfo:GFO_3278 RfaQ-like lipopolysaccharide core biosynthesis glycosyl transferase.
  
    0.693
aroQ
3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
       0.682
Coch_0068
KEGG: gfo:GFO_1858 conserved hypothetical protein, secreted.
       0.682
Coch_0607
PFAM: Uroporphyrinogen III synthase HEM4; KEGG: gfo:GFO_0106 uroporphyrinogen-III synthase.
  
     0.431
Coch_0070
KEGG: pdi:BDI_0092 hypothetical protein.
       0.423
Coch_0190
PFAM: GH3 auxin-responsive promoter; KEGG: gfo:GFO_3289 conserved hypothetical protein, auxin-inducible GH3 family.
  
     0.420
Coch_2172
KEGG: gfo:GFO_3478 hypothetical protein.
  
     0.406
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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