Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0072KEGG: fjo:Fjoh_4571 hypothetical protein. (321 aa)    
Predicted Functional Partners:
Coch_0077
KEGG: fjo:Fjoh_2443 hypothetical protein.
 
     0.791
Coch_1791
KEGG: fjo:Fjoh_3471 hypothetical protein.
  
     0.755
Coch_1243
KEGG: gfo:GFO_3541 conserved hypothetical protein, secreted.
  
     0.749
Coch_1033
KEGG: fjo:Fjoh_0978 hypothetical protein.
  
    0.737
Coch_1460
KEGG: fps:FP1615 hypothetical protein.
  
     0.724
Coch_0261
KEGG: gfo:GFO_0089 membrane protein.
  
     0.715
Coch_0608
KEGG: fps:FP0181 hypothetical protein.
  
     0.714
Coch_2190
KEGG: fps:FP1047 hypothetical protein.
  
     0.713
Coch_1201
KEGG: gfo:GFO_1792 hypothetical protein.
  
     0.712
Coch_1448
KEGG: mtp:Mthe_1690 hypothetical protein.
  
     0.710
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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