Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Coch_0074PFAM: LrgB family protein; KEGG: bfs:BF0417 LrgB family transmembrane protein. (230 aa)    
Predicted Functional Partners:
Coch_0073
PFAM: LrgA family protein; KEGG: bvu:BVU_0522 hypothetical protein.
 
  
 0.991
Coch_0072
KEGG: fjo:Fjoh_4571 hypothetical protein.
       0.534
Coch_0069
PFAM: glycosyl transferase family 9; KEGG: gfo:GFO_3278 RfaQ-like lipopolysaccharide core biosynthesis glycosyl transferase.
   
    0.494
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
    0.476
Coch_0071
KEGG: pdi:BDI_2423 glycoside hydrolase family protein.
       0.450
Coch_0076
KEGG: fjo:Fjoh_3451 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease.
 
     0.439
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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