Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0084KEGG: fps:FP2012 hypothetical protein. (96 aa)    
Predicted Functional Partners:
Coch_0085
KEGG: fjo:Fjoh_0132 hypothetical protein.
 
     0.835
murA
UDP-N-acetylglucosamine1- carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
       0.811
Coch_0083
Hypothetical protein; KEGG: bsu:BSU39230 cell wall-associated protein precursor (CWBP200, 105, 62).
       0.752
Coch_1969
KEGG: gfo:GFO_0515 hypothetical protein.
  
     0.694
Coch_0151
KEGG: gfo:GFO_2393 hypothetical protein.
  
     0.665
Coch_1003
PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: gfo:GFO_2723 sec-independent protein translocase protein TatA/E.
  
    0.615
Coch_0087
PFAM: aminotransferase class I and II; KEGG: bfs:BF0911 putative aminotransferase.
       0.590
Coch_1932
KEGG: fps:FP1986 hypothetical protein.
  
     0.576
rpmC
TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: gfo:GFO_2831 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
    0.525
Coch_2148
KEGG: fps:FP0664 hypothetical protein.
  
     0.496
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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