Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Coch_0089 | Coch_0091 | Coch_0089 | Coch_0091 | Hypothetical protein. | PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: fjo:Fjoh_3452 ion transport protein. | 0.416 |
Coch_0089 | Coch_0092 | Coch_0089 | Coch_0092 | Hypothetical protein. | PFAM: phospholipase/Carboxylesterase; KEGG: fjo:Fjoh_2447 phospholipase/carboxylesterase. | 0.416 |
Coch_0089 | Coch_0093 | Coch_0089 | Coch_0093 | Hypothetical protein. | Dihydroorotase; KEGG: fps:FP1094 dihydroorotase. | 0.416 |
Coch_0089 | miaA | Coch_0089 | Coch_0090 | Hypothetical protein. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.416 |
Coch_0089 | mraY | Coch_0089 | Coch_0088 | Hypothetical protein. | phospho-N-acetylmuramoyl-pentapeptide-transferas e; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.668 |
Coch_0091 | Coch_0089 | Coch_0091 | Coch_0089 | PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: fjo:Fjoh_3452 ion transport protein. | Hypothetical protein. | 0.416 |
Coch_0091 | Coch_0092 | Coch_0091 | Coch_0092 | PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: fjo:Fjoh_3452 ion transport protein. | PFAM: phospholipase/Carboxylesterase; KEGG: fjo:Fjoh_2447 phospholipase/carboxylesterase. | 0.785 |
Coch_0091 | Coch_0093 | Coch_0091 | Coch_0093 | PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: fjo:Fjoh_3452 ion transport protein. | Dihydroorotase; KEGG: fps:FP1094 dihydroorotase. | 0.774 |
Coch_0091 | miaA | Coch_0091 | Coch_0090 | PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: fjo:Fjoh_3452 ion transport protein. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.824 |
Coch_0092 | Coch_0089 | Coch_0092 | Coch_0089 | PFAM: phospholipase/Carboxylesterase; KEGG: fjo:Fjoh_2447 phospholipase/carboxylesterase. | Hypothetical protein. | 0.416 |
Coch_0092 | Coch_0091 | Coch_0092 | Coch_0091 | PFAM: phospholipase/Carboxylesterase; KEGG: fjo:Fjoh_2447 phospholipase/carboxylesterase. | PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: fjo:Fjoh_3452 ion transport protein. | 0.785 |
Coch_0092 | Coch_0093 | Coch_0092 | Coch_0093 | PFAM: phospholipase/Carboxylesterase; KEGG: fjo:Fjoh_2447 phospholipase/carboxylesterase. | Dihydroorotase; KEGG: fps:FP1094 dihydroorotase. | 0.841 |
Coch_0092 | miaA | Coch_0092 | Coch_0090 | PFAM: phospholipase/Carboxylesterase; KEGG: fjo:Fjoh_2447 phospholipase/carboxylesterase. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.777 |
Coch_0093 | Coch_0089 | Coch_0093 | Coch_0089 | Dihydroorotase; KEGG: fps:FP1094 dihydroorotase. | Hypothetical protein. | 0.416 |
Coch_0093 | Coch_0091 | Coch_0093 | Coch_0091 | Dihydroorotase; KEGG: fps:FP1094 dihydroorotase. | PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: fjo:Fjoh_3452 ion transport protein. | 0.774 |
Coch_0093 | Coch_0092 | Coch_0093 | Coch_0092 | Dihydroorotase; KEGG: fps:FP1094 dihydroorotase. | PFAM: phospholipase/Carboxylesterase; KEGG: fjo:Fjoh_2447 phospholipase/carboxylesterase. | 0.841 |
Coch_0093 | miaA | Coch_0093 | Coch_0090 | Dihydroorotase; KEGG: fps:FP1094 dihydroorotase. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.781 |
miaA | Coch_0089 | Coch_0090 | Coch_0089 | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | Hypothetical protein. | 0.416 |
miaA | Coch_0091 | Coch_0090 | Coch_0091 | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: fjo:Fjoh_3452 ion transport protein. | 0.824 |
miaA | Coch_0092 | Coch_0090 | Coch_0092 | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | PFAM: phospholipase/Carboxylesterase; KEGG: fjo:Fjoh_2447 phospholipase/carboxylesterase. | 0.777 |
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