Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Coch_0096PFAM: protein of unknown function DUF419; KEGG: gfo:GFO_0065 protein containing DUF419. (114 aa)    
Predicted Functional Partners:
Coch_0097
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: lbf:LBF_3007 lactoylglutathione-like lyase.
       0.758
Coch_0098
PFAM: 2-nitropropane dioxygenase NPD; KEGG: gfo:GFO_2224 2-nitropropane dioxygenase family protein.
       0.754
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.537
Coch_0095
PFAM: glycosyl transferase family 2; KEGG: gfo:GFO_3619 transmembrane family-2 glycosyl transferase-possibly involved in biofilm formation.
       0.526
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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