Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
Coch_0105KEGG: fps:FP0106 hypothetical protein. (317 aa)    
Predicted Functional Partners:
panD
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
       0.816
Coch_1846
KEGG: fjo:Fjoh_3466 hypothetical protein.
  
     0.659
Coch_0340
PFAM: Smr protein/MutS2; KEGG: gfo:GFO_1881 Smr domain protein-possibly involved in DNA repair.
 
     0.633
Coch_1483
PFAM: glycoside hydrolase family 3 domain protein; beta-lactamase; KEGG: gfo:GFO_1634 family 3 glycosyl hydrolase/beta- lactamase fusion protein.
  
   
 0.559
Coch_1633
Protein involved in gliding motility SprA; KEGG: fjo:Fjoh_1653 hypothetical protein.
  
   
 0.534
Coch_1594
PFAM: OstA family protein; KEGG: fps:FP1772 hypothetical protein.
  
     0.508
Coch_1439
KEGG: gfo:GFO_0399 hypothetical protein.
  
     0.506
Coch_2045
KEGG: fps:FP0716 hypothetical protein.
 
     0.483
Coch_0461
PFAM: protein of unknown function DUF450; KEGG: fps:FP1054 hypothetical protein.
  
     0.476
Coch_2048
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: fjo:Fjoh_1565 endonuclease/exonuclease/phosphatase.
  
  
 0.468
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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