Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0109PFAM: peptidase M16 domain protein; KEGG: fjo:Fjoh_1543 peptidase M16 domain-containing protein. (456 aa)    
Predicted Functional Partners:
Coch_0108
PFAM: peptidase M16 domain protein; KEGG: fjo:Fjoh_1544 peptidase M16 domain-containing protein.
     0.994
Coch_0136
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gfo:GFO_1472 ferredoxin-like protein.
  
 
 0.774
atpA
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
   
 0.768
atpH
ATP synthase F1, delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family.
   
 0.764
atpG
ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
   
 0.723
Coch_0241
KEGG: gfo:GFO_3149 succinate dehydrogenase flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein.
   
 
 0.644
Coch_0240
KEGG: fjo:Fjoh_0675 succinate dehydrogenase/fumarate reductase iron-sulfur subunit.
   
 
 0.619
Coch_0107
PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: bvu:BVU_1977 putative thiol-disulfide oxidoreductase.
  
 
 0.599
Coch_0711
PFAM: Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; ferredoxin; KEGG: pfl:PFL_5093 CDP-6-deoxy-L-threo-D-glycero-4- hexulose-3-dehydrase reductase.
   
 
 0.590
Coch_0911
PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: fps:FP0115 ATP synthase epsilon subunit.
   
 
 0.583
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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