Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0113PFAM: ABC-2 type transporter; KEGG: bfs:BF2649 putative ABC transport system, membrane protein. (376 aa)    
Predicted Functional Partners:
Coch_0114
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cts:Ctha_1314 ABC transporter-related protein.
  
 0.994
Coch_0115
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pdi:BDI_1335 putative ABC transporter ATP- binding protein.
  
 0.991
Coch_1526
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fjo:Fjoh_1096 ABC transporter related.
  
 0.944
Coch_1219
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fjo:Fjoh_1516 ABC transporter related.
 
  
 0.930
Coch_2040
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gfo:GFO_0506 ABC-type transporter ATP-binding protein.
 
      0.899
Coch_1621
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fjo:Fjoh_0285 ABC transporter related.
      0.876
Coch_0112
PFAM: ABC-2 type transporter; KEGG: pdi:BDI_1332 putative ABC transport system, membrane protein.
 
    
0.832
Coch_0123
KEGG: bth:BT_0561 hypothetical protein.
 
  
 0.811
Coch_0124
KEGG: pdi:BDI_1337 outer membrane efflux protein.
 
     0.787
Coch_0125
PFAM: regulatory protein TetR; KEGG: cts:Ctha_1319 transcriptional regulator, TetR family.
 
     0.608
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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