Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0124KEGG: pdi:BDI_1337 outer membrane efflux protein. (430 aa)    
Predicted Functional Partners:
Coch_0123
KEGG: bth:BT_0561 hypothetical protein.
 
 
 0.977
Coch_0125
PFAM: regulatory protein TetR; KEGG: cts:Ctha_1319 transcriptional regulator, TetR family.
 
   
 0.838
Coch_0113
PFAM: ABC-2 type transporter; KEGG: bfs:BF2649 putative ABC transport system, membrane protein.
 
     0.787
Coch_0115
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pdi:BDI_1335 putative ABC transporter ATP- binding protein.
 
     0.783
Coch_0112
PFAM: ABC-2 type transporter; KEGG: pdi:BDI_1332 putative ABC transport system, membrane protein.
 
     0.769
Coch_0463
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: fjo:Fjoh_1672 RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.766
Coch_0114
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cts:Ctha_1314 ABC transporter-related protein.
 
     0.765
Coch_0385
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pdi:BDI_3353 periplasmic component of efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.699
Coch_1672
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: fjo:Fjoh_1267 RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.699
Coch_0384
PFAM: outer membrane efflux protein; KEGG: bth:BT_1212 outer membrane efflux protein.
  
  
  0.610
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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