Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0125PFAM: regulatory protein TetR; KEGG: cts:Ctha_1319 transcriptional regulator, TetR family. (204 aa)    
Predicted Functional Partners:
Coch_0124
KEGG: pdi:BDI_1337 outer membrane efflux protein.
 
   
 0.838
Coch_0123
KEGG: bth:BT_0561 hypothetical protein.
 
   
 0.806
Coch_0115
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pdi:BDI_1335 putative ABC transporter ATP- binding protein.
 
   
 0.648
Coch_0112
PFAM: ABC-2 type transporter; KEGG: pdi:BDI_1332 putative ABC transport system, membrane protein.
 
     0.614
Coch_0113
PFAM: ABC-2 type transporter; KEGG: bfs:BF2649 putative ABC transport system, membrane protein.
 
     0.608
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.537
Coch_0114
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cts:Ctha_1314 ABC transporter-related protein.
 
   
 0.529
Coch_1306
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sde:Sde_0802 transcriptional regulator, AraC family.
  
  
 0.409
Coch_0126
Hypothetical protein.
       0.406
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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