Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0130TIGRFAM: GTP-binding protein TypA; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: gfo:GFO_2547 GTP-binding protein TypA. (601 aa)    
Predicted Functional Partners:
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
  
 0.774
rplA
Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.
   
  
 0.623
rpsI
PFAM: ribosomal protein S9; KEGG: fjo:Fjoh_1611 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
    0.623
tsf
Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
  
  
 0.620
Coch_2008
TIGRFAM: trigger factor; PFAM: trigger factor domain; KEGG: gfo:GFO_0222 trigger factor.
  
  
 0.598
Coch_0993
TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: gfo:GFO_0604 translation initiation factor IF- 3; Belongs to the IF-3 family.
  
 
 0.569
rpmI
TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: fjo:Fjoh_0026 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
  
    0.564
rpsB
TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: fjo:Fjoh_1610 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
   
  
 0.556
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
    0.550
tilS
tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
  
    0.542
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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