Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0134KEGG: fjo:Fjoh_1568 hypothetical protein. (667 aa)    
Predicted Functional Partners:
Coch_0133
Phenylacetate--CoA ligase; KEGG: fps:FP2253 coenzyme F390 synthetase.
       0.556
Coch_0135
PFAM: tryptophan halogenase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; monooxygenase FAD- binding; FAD dependent oxidoreductase; KEGG: fps:FP2288 putative dehydrogenase/oxidoreductase.
       0.542
Coch_1094
PFAM: secretion protein HlyD family protein; KEGG: fjo:Fjoh_1163 secretion protein HlyD family protein.
  
     0.513
Coch_1558
PFAM: OmpA/MotB domain protein; KEGG: fjo:Fjoh_3415 OmpA/MotB domain-containing protein.
  
     0.500
Coch_2086
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: chu:CHU_0633 hypothetical protein.
  
    0.468
Coch_1093
KEGG: fjo:Fjoh_0447 hypothetical protein.
 
     0.450
Coch_0136
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gfo:GFO_1472 ferredoxin-like protein.
  
  
 0.446
Coch_1450
PFAM: histidine kinase A domain protein; ATP- binding region ATPase domain protein; SMART: histidine kinase A domain protein; ATP- binding region ATPase domain protein; KEGG: chu:CHU_3533 two-component sensor histidine kinase.
  
     0.446
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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