Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Coch_0140KEGG: gfo:GFO_2556 conserved hypothetical protein, membrane. (210 aa)    
Predicted Functional Partners:
Coch_0139
Transcriptional regulator; KEGG: gfo:GFO_2557 hypothetical protein.
 
     0.899
Coch_0138
PFAM: Inner membrane CreD family protein; KEGG: gfo:GFO_2560 hypothetical protein.
 
     0.773
Coch_2000
Transcriptional regulator; KEGG: bvu:BVU_0461 hypothetical protein.
 
     0.684
Coch_1316
KEGG: cpy:Cphy_2916 hypothetical protein.
 
     0.562
Coch_0213
KEGG: pgn:PGN_2091 hypothetical protein.
  
     0.528
Coch_0141
PFAM: peptidase M16 domain protein; KEGG: cts:Ctha_1714 peptidase M16 domain protein; Belongs to the peptidase M16 family.
  
    0.459
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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