Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0152KEGG: fps:FP2495 hypothetical protein. (108 aa)    
Predicted Functional Partners:
Coch_0153
KEGG: fjo:Fjoh_1009 hypothetical protein.
 
     0.918
Coch_0154
KEGG: gfo:GFO_3304 hypothetical protein.
       0.780
Coch_0155
PFAM: cell cycle protein; KEGG: gfo:GFO_2962 rod shape-determining protein MrdB; Belongs to the SEDS family.
       0.723
Coch_0156
PFAM: DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS domain protein; KEGG: fjo:Fjoh_2709 DNA mismatch repair protein MutS domain-containing protein.
       0.723
Coch_0151
KEGG: gfo:GFO_2393 hypothetical protein.
       0.532
Coch_0149
PFAM: protein of unknown function DUF368; KEGG: gfo:GFO_0769 membrane protein containing DUF368.
       0.509
Coch_0150
KEGG: fjo:Fjoh_2748 major facilitator transporter.
       0.509
Coch_1670
PFAM: protein of unknown function DUF893 YccS/YhfK; KEGG: gfo:GFO_1528 membrane protein containing DUF893.
  
     0.437
Coch_0281
KEGG: gfo:GFO_1614 membrane or secreted protein.
  
     0.434
Coch_1987
KEGG: fjo:Fjoh_4068 hypothetical protein.
  
     0.416
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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