Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0153KEGG: fjo:Fjoh_1009 hypothetical protein. (122 aa)    
Predicted Functional Partners:
Coch_0152
KEGG: fps:FP2495 hypothetical protein.
 
     0.918
Coch_0154
KEGG: gfo:GFO_3304 hypothetical protein.
       0.779
Coch_0155
PFAM: cell cycle protein; KEGG: gfo:GFO_2962 rod shape-determining protein MrdB; Belongs to the SEDS family.
       0.723
Coch_0156
PFAM: DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS domain protein; KEGG: fjo:Fjoh_2709 DNA mismatch repair protein MutS domain-containing protein.
       0.723
Coch_2119
KEGG: fjo:Fjoh_1589 hypothetical protein.
  
     0.718
Coch_1852
KEGG: fjo:Fjoh_4924 hypothetical protein.
  
     0.695
Coch_1878
KEGG: fjo:Fjoh_2510 hypothetical protein.
  
     0.690
Coch_0983
Hypothetical protein; KEGG: gfo:GFO_0093 conserved hypothetical protein, membrane.
  
     0.631
Coch_0452
PFAM: surface antigen (D15); KEGG: gfo:GFO_0385 conserved hypothetical protein, secreted.
  
     0.609
Coch_2103
PFAM: peptidylprolyl isomerase FKBP-type; KEGG: gfo:GFO_2403 secreted protein.
  
     0.576
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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