Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0170PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bfr:BF1447 putative transporter. (619 aa)    
Predicted Functional Partners:
Coch_0013
H(+)-transporting two-sector ATPase; PFAM: cation transporter; KEGG: fnu:FN1725 potassium uptake protein KtrB.
  
 
 0.774
Coch_0765
Malate dehydrogenase (oxaloacetate- decarboxylating) (NADP(+)); PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase; KEGG: fjo:Fjoh_1651 malic enzyme; phosphate acetyltransferase.
  
  
 0.660
Coch_0169
PFAM: phosphoribosyltransferase; KEGG: gfo:GFO_2406 phosphoribosyltransferase.
  
    0.656
Coch_0171
Hypothetical protein; KEGG: RNA helicase, putative.
       0.648
Coch_0493
PFAM: Chloride channel core; CBS domain containing protein; KEGG: gfo:GFO_3091 voltage gated chloride channel.
 
  
 0.603
Coch_0172
PFAM: aminotransferase class V; KEGG: fps:FP0708 cysteine desulfurase.
  
    0.598
Coch_0220
Two component transcriptional regulator, AraC family; PFAM: response regulator receiver; periplasmic binding protein/LacI transcriptional regulator; ATP- binding region ATPase domain protein; histidine kinase A domain protein; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; helix-turn- helix- domain containing protein AraC type; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: bvu:BVU_1666 putative two-component system sensor histidine kinase/response regulator, hybrid.
 
  
 0.541
Coch_1221
TIGRFAM: calcium-translocating P-type ATPase, PMCA- type; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: amu:Amuc_0218 calcium-translocating P-type ATPase, PMCA-type.
  
 
 0.537
Coch_0607
PFAM: Uroporphyrinogen III synthase HEM4; KEGG: gfo:GFO_0106 uroporphyrinogen-III synthase.
  
    0.490
Coch_1477
PFAM: Uroporphyrinogen III synthase HEM4; KEGG: fps:FP0042 uroporphyrinogen-III synthase.
  
    0.490
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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