Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Coch_0171Hypothetical protein; KEGG: RNA helicase, putative. (88 aa)    
Predicted Functional Partners:
Coch_0172
PFAM: aminotransferase class V; KEGG: fps:FP0708 cysteine desulfurase.
       0.705
Coch_0170
PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bfr:BF1447 putative transporter.
       0.648
Coch_0169
PFAM: phosphoribosyltransferase; KEGG: gfo:GFO_2406 phosphoribosyltransferase.
       0.545
Coch_0173
PFAM: protein of unknown function DUF349; KEGG: gfo:GFO_0766 hypothetical protein.
       0.456
Coch_0168
Hypothetical protein; KEGG: surface antigen BspA-like.
       0.401
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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