Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Coch_0185PFAM: alpha/beta hydrolase fold; KEGG: fnu:FN1306 methyltransferase. (567 aa)    
Predicted Functional Partners:
Coch_1580
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: pmy:Pmen_0010 CDP-alcohol phosphatidyltransferase.
 
  
 0.773
Coch_1524
Protein tyrosine/serine phosphatase; PFAM: putative tyrosine phosphatase; KEGG: abb:ABBFA_000596 dual specificity phosphatase, catalytic domain protein.
  
     0.633
Coch_0136
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gfo:GFO_1472 ferredoxin-like protein.
   
   0.613
Coch_0744
KEGG: fjo:Fjoh_1089 hypothetical protein.
 
   0.506
Coch_1648
KEGG: fjo:Fjoh_3938 hypothetical protein.
 
   0.506
Coch_1309
PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; Male sterility domain; KEGG: cts:Ctha_2428 NmrA family protein.
 
   0.504
acpP
Conserved hypothetical protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
   0.422
acpP-2
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
   0.422
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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