Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0190PFAM: GH3 auxin-responsive promoter; KEGG: gfo:GFO_3289 conserved hypothetical protein, auxin-inducible GH3 family. (495 aa)    
Predicted Functional Partners:
Coch_0415
PFAM: alpha/beta hydrolase fold; KEGG: gfo:GFO_2777 alpha/beta fold hydrolase.
  
   
 0.715
Coch_1769
KEGG: gfo:GFO_3422 hypothetical protein.
  
     0.670
Coch_0607
PFAM: Uroporphyrinogen III synthase HEM4; KEGG: gfo:GFO_0106 uroporphyrinogen-III synthase.
  
     0.622
Coch_1512
KEGG: gfo:GFO_1471 hypothetical protein.
 
 
 0.622
Coch_0191
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
       0.473
Coch_0215
KEGG: gfo:GFO_2766 FtsQ-like cell division protein.
  
     0.450
Coch_0461
PFAM: protein of unknown function DUF450; KEGG: fps:FP1054 hypothetical protein.
  
     0.445
Coch_2135
KEGG: gfo:GFO_1635 hypothetical protein.
  
     0.445
argS
KEGG: fjo:Fjoh_0251 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase.
 
    0.425
Coch_0064
PFAM: GSCFA domain protein; KEGG: fjo:Fjoh_1897 hypothetical protein.
  
     0.420
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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