Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Coch_0194KEGG: deh:cbdb_A1523 hypothetical protein. (226 aa)    
Predicted Functional Partners:
Coch_0195
PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 immunoglobulin domain protein beta- sandwich; coagulation factor 5/8 type domain protein; KEGG: bth:BT_4050 beta-galactosidase.
       0.773
Coch_0193
TIGRFAM: aspartate ammonia-lyase; PFAM: fumarate lyase; KEGG: cff:CFF8240_1643 aspartate ammonia-lyase.
  
   0.562
Coch_1686
KEGG: fjo:Fjoh_0247 hypothetical protein.
  
     0.487
Coch_0648
KEGG: dvu:DVU1111 hypothetical protein.
  
     0.468
Coch_1546
PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: fjo:Fjoh_2013 cytochrome c biogenesis protein, transmembrane region.
  
 
 0.467
Coch_1687
PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: fjo:Fjoh_0246 peptidoglycan-binding LysM.
  
   
 0.457
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.401
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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