Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0198PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bfr:BF3437 hypothetical protein. (1020 aa)    
Predicted Functional Partners:
Coch_0199
PFAM: RagB/SusD domain protein; KEGG: bfs:BF3257 hypothetical protein.
 
 
   0.960
Coch_0197
PFAM: RagB/SusD domain protein; KEGG: bfr:BF0953 hypothetical protein.
 
 
   0.910
Coch_1019
PFAM: RagB/SusD domain protein; KEGG: bth:BT_2821 hypothetical protein.
  
 
   0.835
Coch_1472
PFAM: RagB/SusD domain protein; KEGG: gfo:GFO_1712 SusD/RagB family protein.
 
 
   0.833
Coch_1739
KEGG: bth:BT_4200 hypothetical protein.
 
   0.832
Coch_0226
PFAM: RagB/SusD domain protein; KEGG: bth:BT_1762 hypothetical protein.
 
 
   0.806
Coch_2061
PFAM: RagB/SusD domain protein; KEGG: bfs:BF1718 hypothetical protein.
 
 
   0.779
Coch_1344
PFAM: RagB/SusD domain protein; KEGG: gfo:GFO_1732 SusD/RagB family protein containing tetratricopeptide repeats.
 
    0.775
Coch_0444
PFAM: RagB/SusD domain protein; KEGG: bth:BT_3311 hypothetical protein.
 
 
   0.774
Coch_1122
PFAM: RagB/SusD domain protein; KEGG: bth:BT_3568 hypothetical protein.
 
 
   0.772
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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