Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0199PFAM: RagB/SusD domain protein; KEGG: bfs:BF3257 hypothetical protein. (511 aa)    
Predicted Functional Partners:
Coch_0198
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bfr:BF3437 hypothetical protein.
 
 
   0.960
Coch_0196
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bfs:BF0871 hypothetical protein.
 
     0.856
Coch_1139
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bfr:BF4448 hypothetical protein.
  
 
   0.843
Coch_1473
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: gfo:GFO_1711 TonB-dependent outer membrane receptor.
  
 
   0.843
Coch_0932
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bth:BT_3090 hypothetical protein.
  
 
   0.837
Coch_0227
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bth:BT_1763 hypothetical protein.
  
 
   0.796
Coch_1022
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bth:BT_2818 hypothetical protein.
  
 
   0.795
Coch_1121
PFAM: TonB-dependent receptor plug; KEGG: bth:BT_3569 hypothetical protein.
  
 
   0.781
Coch_1343
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bth:BT_3332 hypothetical protein.
  
     0.766
Coch_1020
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bth:BT_0364 hypothetical protein.
 
     0.761
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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