STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0200KEGG: pdi:BDI_2833 ATP/GTP-binding site. (564 aa)    
Predicted Functional Partners:
Coch_0198
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bfr:BF3437 hypothetical protein.
   
   0.678
Coch_0197
PFAM: RagB/SusD domain protein; KEGG: bfr:BF0953 hypothetical protein.
 
     0.628
Coch_0016
Exo-alpha-sialidase; KEGG: bvu:BVU_4143 sialidase.
  
     0.611
Coch_2065
PFAM: Kelch repeat-containing protein; KEGG: bfr:BF1735 hypothetical protein.
  
     0.597
Coch_1140
PFAM: RagB/SusD domain protein; KEGG: bfs:BF4247 hypothetical protein.
  
     0.557
Coch_0199
PFAM: RagB/SusD domain protein; KEGG: bfs:BF3257 hypothetical protein.
       0.553
Coch_1139
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bfr:BF4448 hypothetical protein.
  
 
   0.537
Coch_0201
Beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: bth:BT_4681 beta-hexosaminidase precursor.
       0.510
Coch_1424
Beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: bfr:BF1730 beta-N-acetylhexosaminidase.
  
     0.489
Coch_1469
PFAM: glycoside hydrolase family 31; KEGG: bfs:BF1332 putative alpha-glucosidase II; Belongs to the glycosyl hydrolase 31 family.
  
     0.480
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.