Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0205KEGG: gfo:GFO_2272 hypothetical protein. (137 aa)    
Predicted Functional Partners:
Coch_0207
PFAM: protein of unknown function DUF177; KEGG: gfo:GFO_3340 protein containing DUF177.
  
     0.763
Coch_0085
KEGG: fjo:Fjoh_0132 hypothetical protein.
  
     0.756
Coch_0607
PFAM: Uroporphyrinogen III synthase HEM4; KEGG: gfo:GFO_0106 uroporphyrinogen-III synthase.
  
     0.746
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
     0.721
Coch_1405
TIGRFAM: rod shape-determining protein MreD; KEGG: gfo:GFO_2960 conserved hypothetical protein, membrane.
  
     0.688
Coch_1557
TIGRFAM: ribosomal subunit interface protein; KEGG: fjo:Fjoh_1935 putative sigma 54 modulation protein/ribosomal protein S30EA.
  
     0.672
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.645
Coch_2172
KEGG: gfo:GFO_3478 hypothetical protein.
  
     0.642
Coch_1548
PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: fps:FP1402 hypothetical protein.
  
     0.600
Coch_1501
KEGG: gfo:GFO_0649 hypothetical protein.
  
     0.594
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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