Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Coch_0207PFAM: protein of unknown function DUF177; KEGG: gfo:GFO_3340 protein containing DUF177. (176 aa)    
Predicted Functional Partners:
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: gfo:GFO_3341 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
 
  
 0.979
rplK
Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
   
    0.826
rpsP
TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: gfo:GFO_3030 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
    0.804
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
    0.803
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
    0.790
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
    0.790
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
   0.783
rplD
Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel.
   
    0.774
Coch_0085
KEGG: fjo:Fjoh_0132 hypothetical protein.
  
     0.763
Coch_0205
KEGG: gfo:GFO_2272 hypothetical protein.
  
     0.763
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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