Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0212KEGG: fps:FP0732 hypothetical protein. (276 aa)    
Predicted Functional Partners:
Coch_0211
KEGG: fjo:Fjoh_2499 hypothetical protein.
 
     0.918
Coch_2190
KEGG: fps:FP1047 hypothetical protein.
  
     0.739
Coch_0775
KEGG: gfo:GFO_2979 secreted protein containing tetratricopeptide repeats.
  
     0.725
Coch_0213
KEGG: pgn:PGN_2091 hypothetical protein.
       0.723
Coch_0407
KEGG: gfo:GFO_0092 secreted protein.
  
     0.723
Coch_1855
PFAM: peptidylprolyl isomerase FKBP-type; KEGG: gfo:GFO_0787 gliding motility protein GldI.
  
     0.714
Coch_1775
KEGG: fjo:Fjoh_0264 hypothetical protein.
  
     0.711
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
       0.707
Coch_0215
KEGG: gfo:GFO_2766 FtsQ-like cell division protein.
       0.707
Coch_1828
KEGG: gfo:GFO_0407 hypothetical protein.
  
     0.703
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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