Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0219KEGG: pgi:PG1685 hypothetical protein. (260 aa)    
Predicted Functional Partners:
Coch_0577
Hypothetical protein; KEGG: tde:TDE0206 surface antigen, putative.
  
     0.709
Coch_0218
PFAM: protein of unknown function DUF421; KEGG: smu:SMU.1642c hypothetical protein.
       0.673
Coch_1607
KEGG: bfs:BF4040 hypothetical protein.
  
     0.620
Coch_0246
KEGG: bfs:BF3562 hypothetical protein.
  
     0.611
Coch_0245
KEGG: bvu:BVU_0248 hypothetical protein.
  
     0.542
Coch_0690
KEGG: bvu:BVU_0533 acid phosphatase; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related.
  
     0.470
Coch_1292
PFAM: Bile acid:sodium symporter; KEGG: pdi:BDI_0245 putative sodium-dependent transporter.
  
     0.465
Coch_0216
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: pgn:PGN_0549 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
       0.461
Coch_0217
TIGRFAM: alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92; KEGG: fjo:Fjoh_2032 putative alpha-1,2-mannosidase.
       0.461
Coch_1101
Nitrite reductase (cytochrome; PFAM: cytochrome c552; KEGG: bth:BT_1417 cytochrome c nitrite reductase; Belongs to the cytochrome c-552 family.
  
     0.410
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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