Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0225KEGG: bth:BT_1761 hypothetical protein. (454 aa)    
Predicted Functional Partners:
Coch_0224
PFAM: Glycosyl hydrolase family 32 domain protein; SMART: glycoside hydrolase family 32; KEGG: bth:BT_1760 glycosylhydrolase.
 
 
 0.968
Coch_0226
PFAM: RagB/SusD domain protein; KEGG: bth:BT_1762 hypothetical protein.
 
 
   0.896
Coch_0227
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bth:BT_1763 hypothetical protein.
 
     0.833
Coch_0932
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bth:BT_3090 hypothetical protein.
 
   0.688
Coch_1473
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: gfo:GFO_1711 TonB-dependent outer membrane receptor.
 
   0.648
Coch_0198
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bfr:BF3437 hypothetical protein.
 
   0.636
Coch_0199
PFAM: RagB/SusD domain protein; KEGG: bfs:BF3257 hypothetical protein.
 
   0.634
Coch_1019
PFAM: RagB/SusD domain protein; KEGG: bth:BT_2821 hypothetical protein.
 
   0.621
Coch_0223
Levanase; KEGG: pdi:BDI_3373 levanase; PFAM: Glycosyl hydrolase family 32 domain protein; SMART: glycoside hydrolase family 32; Belongs to the glycosyl hydrolase 32 family.
  
   0.614
Coch_1139
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bfr:BF4448 hypothetical protein.
  
   0.561
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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