Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Coch_0230RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: gfo:GFO_2702 RNA polymerase ECF-type sigma factor. (183 aa)    
Predicted Functional Partners:
Coch_0231
KEGG: gfo:GFO_2700 membrane or secreted protein.
       0.816
Coch_1288
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: fjo:Fjoh_1787 ECF subfamily RNA polymerase sigma-24 factor.
  
     0.754
Coch_0232
PFAM: LmbE family protein; KEGG: fjo:Fjoh_4717 LmbE family protein.
  
  
 0.708
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.694
Coch_0233
PFAM: protein of unknown function DUF535; KEGG: cvi:CV_0913 hypothetical protein.
       0.693
Coch_0234
PFAM: polysaccharide deacetylase; KEGG: fps:FP1633 polysaccharide deacetylase.
       0.693
Coch_0235
Hydroxyisourate hydrolase; KEGG: apa:APP7_0875 transthyretin-like periplasmic protein; TIGRFAM: hydroxyisourate hydrolase; PFAM: Transthyretin; SMART: Transthyretin; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
       0.683
Coch_0238
Peroxiredoxin; PFAM: glutathione peroxidase; KEGG: fjo:Fjoh_2944 glutathione peroxidase; Belongs to the glutathione peroxidase family.
  
  
 0.664
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.657
Coch_0236
PFAM: glycosyl transferase family 2; KEGG: fps:FP1634 glycosyl transferase, group 2 family protein.
     
 0.653
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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