Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0233PFAM: protein of unknown function DUF535; KEGG: cvi:CV_0913 hypothetical protein. (306 aa)    
Predicted Functional Partners:
Coch_0232
PFAM: LmbE family protein; KEGG: fjo:Fjoh_4717 LmbE family protein.
       0.773
Coch_0234
PFAM: polysaccharide deacetylase; KEGG: fps:FP1633 polysaccharide deacetylase.
       0.773
Coch_0235
Hydroxyisourate hydrolase; KEGG: apa:APP7_0875 transthyretin-like periplasmic protein; TIGRFAM: hydroxyisourate hydrolase; PFAM: Transthyretin; SMART: Transthyretin; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
       0.762
Coch_0688
PFAM: sulfatase; KEGG: asu:Asuc_1041 sulfatase.
  
     0.735
Coch_0692
Glucose-1-phosphatase; PFAM: histidine acid phosphatase; KEGG: ecf:ECH74115_1240 glucose-1-phosphatase.
  
     0.728
Coch_0236
PFAM: glycosyl transferase family 2; KEGG: fps:FP1634 glycosyl transferase, group 2 family protein.
       0.726
Coch_0237
KEGG: fps:FP1635 hypothetical protein.
       0.726
Coch_0238
Peroxiredoxin; PFAM: glutathione peroxidase; KEGG: fjo:Fjoh_2944 glutathione peroxidase; Belongs to the glutathione peroxidase family.
       0.716
Coch_0230
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: gfo:GFO_2702 RNA polymerase ECF-type sigma factor.
       0.693
Coch_0231
KEGG: gfo:GFO_2700 membrane or secreted protein.
       0.693
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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