Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0249TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: ccv:CCV52592_0389 Dyp-type peroxidase. (308 aa)    
Predicted Functional Partners:
Coch_0251
Hypothetical protein; KEGG: pdi:BDI_1105 putative outer membrane receptor protein involved in Fe transport.
  
    0.629
Coch_0250
Hypothetical protein.
       0.623
Coch_0252
PFAM: UvrD/REP helicase; KEGG: gfo:GFO_3376 UvrD/REP family helicase; Belongs to the helicase family. UvrD subfamily.
       0.591
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
       0.414
Coch_0247
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: gfo:GFO_0777 ferric uptake regulation protein; Belongs to the Fur family.
     
 0.409
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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