Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0253KEGG: gfo:GFO_1053 secreted protein containing glycosyl hydrolase BNR repeats. (348 aa)    
Predicted Functional Partners:
Coch_0254
Hypothetical protein.
       0.773
Coch_2049
KEGG: gfo:GFO_2688 peptidase, family M14.
 
     0.678
Coch_1875
KEGG: fjo:Fjoh_0451 hypothetical protein.
  
     0.461
Coch_1243
KEGG: gfo:GFO_3541 conserved hypothetical protein, secreted.
  
     0.458
Coch_0252
PFAM: UvrD/REP helicase; KEGG: gfo:GFO_3376 UvrD/REP family helicase; Belongs to the helicase family. UvrD subfamily.
       0.452
Coch_1201
KEGG: gfo:GFO_1792 hypothetical protein.
  
     0.450
Coch_0250
Hypothetical protein.
       0.432
Coch_0251
Hypothetical protein; KEGG: pdi:BDI_1105 putative outer membrane receptor protein involved in Fe transport.
       0.432
Coch_0278
KEGG: gfo:GFO_1098 secreted protein.
  
     0.429
Coch_2048
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: fjo:Fjoh_1565 endonuclease/exonuclease/phosphatase.
  
     0.414
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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