Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Coch_0256PFAM: oxidoreductase domain protein; KEGG: bvu:BVU_0340 putative oxidoreductase. (474 aa)    
Predicted Functional Partners:
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: gfo:GFO_2926 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.639
Coch_1518
PFAM: aminoglycoside phosphotransferase; KEGG: blj:BLD_1766 putative homoserine kinase type II.
 
     0.618
Coch_2160
Alpha-L-fucosidase; PFAM: coagulation factor 5/8 type domain protein; KEGG: fjo:Fjoh_2028 alpha-L-fucosidase.
  
     0.579
Coch_1424
Beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: bfr:BF1730 beta-N-acetylhexosaminidase.
  
    0.536
Coch_0255
PFAM: ATPase associated with various cellular activities AAA_5; KEGG: mpo:Mpop_1512 ATPase associated with various cellular activities AAA_5.
  
    0.510
Coch_1519
KEGG: bfr:BF4107 hypothetical protein.
 
  
 0.494
Coch_0063
Beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: bfr:BF1734 beta-N-acetylhexosaminidase.
  
    0.484
Coch_1350
Beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; Beta-N-acetylhexosaminidase-like; KEGG: bvu:BVU_4138 beta-N-acetylhexosaminidase.
  
    0.476
Coch_0201
Beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: bth:BT_4681 beta-hexosaminidase precursor.
  
    0.454
Coch_0220
Two component transcriptional regulator, AraC family; PFAM: response regulator receiver; periplasmic binding protein/LacI transcriptional regulator; ATP- binding region ATPase domain protein; histidine kinase A domain protein; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; helix-turn- helix- domain containing protein AraC type; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: bvu:BVU_1666 putative two-component system sensor histidine kinase/response regulator, hybrid.
  
 
 0.454
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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