Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0258KEGG: fjo:Fjoh_0885 hypothetical protein. (168 aa)    
Predicted Functional Partners:
Coch_1186
SMART: Tetratricopeptide domain protein; KEGG: fjo:Fjoh_2813 O-antigen polymerase.
 
     0.586
Coch_1588
Hypothetical protein; KEGG: gfo:GFO_1837 conserved hypothetical protein, secreted.
  
   
 0.568
Coch_1785
KEGG: hypothetical protein; K08900 mitochondrial chaperone BCS1.
  
     0.559
Coch_1587
KEGG: gfo:GFO_0053 conserved hypothetical protein, secreted.
  
   
 0.558
Coch_0635
KEGG: hypothetical protein.
 
 
   0.547
Coch_2059
KEGG: fjo:Fjoh_1770 hypothetical protein.
  
     0.522
Coch_0909
KEGG: bth:BT_3742 hypothetical protein.
  
     0.518
Coch_0259
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: gfo:GFO_0091 hypothetical protein.
       0.506
Coch_0260
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: gfo:GFO_0090 hypothetical protein.
       0.496
Coch_0261
KEGG: gfo:GFO_0089 membrane protein.
       0.496
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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