Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0261KEGG: gfo:GFO_0089 membrane protein. (143 aa)    
Predicted Functional Partners:
Coch_0260
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: gfo:GFO_0090 hypothetical protein.
 
     0.847
Coch_0259
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: gfo:GFO_0091 hypothetical protein.
 
     0.839
Coch_0983
Hypothetical protein; KEGG: gfo:GFO_0093 conserved hypothetical protein, membrane.
  
     0.771
Coch_2190
KEGG: fps:FP1047 hypothetical protein.
  
     0.768
Coch_1352
KEGG: gfo:GFO_2965 membrane protein.
  
     0.766
Coch_1728
KEGG: gfo:GFO_1569 secreted protein.
  
     0.766
Coch_0775
KEGG: gfo:GFO_2979 secreted protein containing tetratricopeptide repeats.
  
     0.765
Coch_1243
KEGG: gfo:GFO_3541 conserved hypothetical protein, secreted.
  
     0.762
Coch_0331
Hypothetical protein; KEGG: gfo:GFO_2503 thiol-disulfide oxidoreductase.
  
     0.757
Coch_1201
KEGG: gfo:GFO_1792 hypothetical protein.
  
     0.754
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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