Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0276PFAM: DinB family protein; KEGG: fjo:Fjoh_0790 DinB family protein. (156 aa)    
Predicted Functional Partners:
Coch_2086
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: chu:CHU_0633 hypothetical protein.
  
     0.658
Coch_0528
PFAM: YCII-related; KEGG: chu:CHU_2475 hypothetical protein.
  
     0.600
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
       0.540
Coch_0278
KEGG: gfo:GFO_1098 secreted protein.
       0.531
carA
TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; KEGG: gfo:GFO_2812 carbamoyl phosphate synthase small subunit; Belongs to the CarA family.
       0.506
Coch_0534
KEGG: ssa:SSA_0596 hypothetical protein.
 
     0.487
Coch_0197
PFAM: RagB/SusD domain protein; KEGG: bfr:BF0953 hypothetical protein.
  
     0.476
Coch_0532
PFAM: cyclic nucleotide-binding; KEGG: fjo:Fjoh_3294 cyclic nucleotide-binding protein.
  
     0.448
Coch_0199
PFAM: RagB/SusD domain protein; KEGG: bfs:BF3257 hypothetical protein.
  
     0.447
Coch_1930
KEGG: bvu:BVU_2306 hypothetical protein.
  
     0.447
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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