Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Coch_0281KEGG: gfo:GFO_1614 membrane or secreted protein. (164 aa)    
Predicted Functional Partners:
Coch_0282
PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: gfo:GFO_1613 OmpA/MotB family outer membrane protein.
 
     0.900
Coch_2120
KEGG: fps:FP2472 hypothetical protein.
  
     0.720
Coch_0608
KEGG: fps:FP0181 hypothetical protein.
  
     0.695
Coch_0021
KEGG: gfo:GFO_0796 hypothetical protein.
  
     0.644
Coch_1243
KEGG: gfo:GFO_3541 conserved hypothetical protein, secreted.
  
     0.627
Coch_0420
TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: gfo:GFO_2376 preprotein translocase subunit SecE; Belongs to the SecE/SEC61-gamma family.
  
     0.596
Coch_1796
KEGG: fps:FP1800 hypothetical protein.
  
     0.583
Coch_0280
KEGG: gfo:GFO_1449 metallo-beta-lactamase domain protein.
       0.568
Coch_0983
Hypothetical protein; KEGG: gfo:GFO_0093 conserved hypothetical protein, membrane.
  
     0.545
Coch_1430
KEGG: gfo:GFO_2924 hypothetical protein.
  
     0.537
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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