Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Coch_0286PFAM: ROK family protein; KEGG: bth:BT_0433 putative xylose repressor. (402 aa)    
Predicted Functional Partners:
hisS
KEGG: gfo:GFO_1113 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein.
       0.773
Coch_0285
TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: fps:FP1755 nucleoside triphosphate pyrophosphohydrolase.
       0.773
Coch_0458
KEGG: fjo:Fjoh_0266 mannose-6-phosphate isomerase, class I; TIGRFAM: mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase type I.
 
  
 0.741
Coch_2021
TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; LmbE family protein; KEGG: fjo:Fjoh_2029 glucosamine-6-phosphate deaminase-like protein.
 
   
 0.526
Coch_0220
Two component transcriptional regulator, AraC family; PFAM: response regulator receiver; periplasmic binding protein/LacI transcriptional regulator; ATP- binding region ATPase domain protein; histidine kinase A domain protein; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; helix-turn- helix- domain containing protein AraC type; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: bvu:BVU_1666 putative two-component system sensor histidine kinase/response regulator, hybrid.
  
  
 0.514
Coch_0287
Hypothetical protein.
       0.507
Coch_2066
PFAM: N-acylglucosamine 2-epimerase; KEGG: bth:BT_3605 N-acylglucosamine 2-epimerase.
 
     0.505
Coch_1433
KEGG: sse:Ssed_0364 hypothetical protein.
 
   
 0.419
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
   
 0.417
Coch_0288
KEGG: amr:AM1_G0073 hypothetical protein.
       0.413
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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