Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Coch_0288KEGG: amr:AM1_G0073 hypothetical protein. (224 aa)    
Predicted Functional Partners:
Coch_0289
Hypothetical protein.
      
0.773
Coch_0290
KEGG: lsp:Bsph_3164 hypothetical protein.
       0.773
Coch_0287
Hypothetical protein.
       0.613
Coch_0291
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: gfo:GFO_3395 OprM-like outer membrane efflux protein.
       0.471
hisS
KEGG: gfo:GFO_1113 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein.
       0.413
Coch_0285
TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: fps:FP1755 nucleoside triphosphate pyrophosphohydrolase.
       0.413
Coch_0286
PFAM: ROK family protein; KEGG: bth:BT_0433 putative xylose repressor.
       0.413
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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