Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0295SMART: Vault protein inter-alpha-trypsin, metazoa; KEGG: rfr:Rfer_2477 hypothetical protein. (995 aa)    
Predicted Functional Partners:
Coch_1186
SMART: Tetratricopeptide domain protein; KEGG: fjo:Fjoh_2813 O-antigen polymerase.
  
     0.687
Coch_1785
KEGG: hypothetical protein; K08900 mitochondrial chaperone BCS1.
  
     0.615
Coch_0296
KEGG: bfr:BF2483 hypothetical protein.
       0.588
Coch_0297
PFAM: YcfA family protein; KEGG: cts:Ctha_1436 YcfA family protein.
       0.569
Coch_1787
KEGG: asa:ASA_1832 hypothetical protein.
  
     0.497
Coch_0349
Hypothetical protein; KEGG: pdi:BDI_3271 clostripain-related protein.
  
     0.494
Coch_1028
PFAM: alpha-2-macroglobulin domain protein; alpha-2- macroglobulin domain protein 2; KEGG: fjo:Fjoh_1529 alpha-2-macroglobulin domain- containing protein.
 
  
 0.477
Coch_1336
PFAM: Hyalin; KEGG: fjo:Fjoh_0979 hypothetical protein.
  
    0.454
Coch_0658
KEGG: fps:FP0016 putative adhesin precursor SprB.
  
    0.448
Coch_1791
KEGG: fjo:Fjoh_3471 hypothetical protein.
  
     0.438
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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