Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Coch_0296KEGG: bfr:BF2483 hypothetical protein. (126 aa)    
Predicted Functional Partners:
Coch_0297
PFAM: YcfA family protein; KEGG: cts:Ctha_1436 YcfA family protein.
   
 
 0.971
Coch_1009
PFAM: Glycoside hydrolase family 42 domain protein; KEGG: cma:Cmaq_0080 glycoside hydrolase family 42 protein.
  
     0.692
Coch_1021
PFAM: RagB/SusD domain protein; KEGG: bvu:BVU_1153 hypothetical protein.
  
     0.604
Coch_0793
KEGG: ckl:CKL_0120 hypothetical protein.
  
     0.598
Coch_1368
KEGG: ctc:CTC01162 membrane associated protein.
  
     0.589
Coch_0295
SMART: Vault protein inter-alpha-trypsin, metazoa; KEGG: rfr:Rfer_2477 hypothetical protein.
       0.588
Coch_1433
KEGG: sse:Ssed_0364 hypothetical protein.
  
     0.586
Coch_1020
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bth:BT_0364 hypothetical protein.
  
     0.562
Coch_0010
KEGG: ava:Ava_0364 hypothetical protein.
  
     0.533
Coch_1022
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bth:BT_2818 hypothetical protein.
  
     0.509
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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