Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0306PFAM: UbiA prenyltransferase; KEGG: gfo:GFO_3628 prenyltransferase family protein. (288 aa)    
Predicted Functional Partners:
Coch_0305
PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: gfo:GFO_3293 membrane-bound lytic murein transglycosylase.
       0.678
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
  
    0.636
Coch_0968
KEGG: gfo:GFO_0145 conserved hypothetical protein, membrane.
 
     0.630
Coch_1855
PFAM: peptidylprolyl isomerase FKBP-type; KEGG: gfo:GFO_0787 gliding motility protein GldI.
  
     0.615
Coch_1461
KEGG: fjo:Fjoh_2111 hypothetical protein.
 
     0.597
Coch_1460
KEGG: fps:FP1615 hypothetical protein.
 
     0.594
Coch_2089
PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: gfo:GFO_1008 phospholipid/glycerol acyltransferase.
 
   
 0.571
Coch_1355
KEGG: fjo:Fjoh_1692 hypothetical protein.
 
     0.548
mltG
Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
   
    0.538
Coch_0515
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.526
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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