Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Coch_0308KEGG: fjo:Fjoh_0730 hypothetical protein. (263 aa)    
Predicted Functional Partners:
Coch_0509
KEGG: fjo:Fjoh_0663 hypothetical protein.
 
    0.591
Coch_0307
PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: aas:Aasi_1217 hypothetical protein.
  
   0.583
Coch_0968
KEGG: gfo:GFO_0145 conserved hypothetical protein, membrane.
  
     0.522
Coch_0382
KEGG: fjo:Fjoh_2199 hypothetical protein.
  
     0.479
Coch_1357
TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: fps:FP2096 outer membrane protein precursor.
  
    0.476
Coch_0306
PFAM: UbiA prenyltransferase; KEGG: gfo:GFO_3628 prenyltransferase family protein.
 
     0.449
fabZ
Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
 
     0.444
Coch_1943
PFAM: glycosyl transferase group 1; KEGG: fjo:Fjoh_2425 glycosyl transferase, group 1.
  
    0.420
Coch_0418
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: fjo:Fjoh_1415 PpiC-type peptidyl-prolyl cis- trans isomerase.
 
    0.415
Coch_0309
TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; Penicillin- binding domain protein; penicillin-binding protein transpeptidase; KEGG: fps:FP2234 membrane carboxypeptidase/penicillin-binding protein PbpC.
       0.410
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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