Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Coch_0322PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: fps:FP0063 putative hemolysin. (611 aa)    
Predicted Functional Partners:
Coch_0321
KEGG: fjo:Fjoh_0411 hypothetical protein.
 
     0.792
Coch_0320
KEGG: gfo:GFO_1892 hypothetical protein.
       0.752
Coch_0323
PFAM: sodium/hydrogen exchanger; KEGG: fjo:Fjoh_0433 sodium/hydrogen exchanger.
       0.746
Coch_0324
Hypothetical protein; KEGG: gfo:GFO_1901 conserved hypothetical protein, secreted.
 
     0.703
Coch_1932
KEGG: fps:FP1986 hypothetical protein.
  
     0.643
Coch_2148
KEGG: fps:FP0664 hypothetical protein.
  
     0.615
Coch_0622
KEGG: gfo:GFO_3629 protein containing mevalonate and galactokinase signatures.
  
     0.520
Coch_1969
KEGG: gfo:GFO_0515 hypothetical protein.
  
     0.517
ribH
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
       0.416
Coch_0326
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: fjo:Fjoh_0213 TPR repeat-containing protein.
       0.416
Your Current Organism:
Capnocytophaga ochracea
NCBI taxonomy Id: 521097
Other names: C. ochracea DSM 7271, Capnocytophaga ochracea ATCC 27872, Capnocytophaga ochracea DSM 7271, Capnocytophaga ochracea str. DSM 7271, Capnocytophaga ochracea strain DSM 7271
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